PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0235s0230.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRF
Protein Properties Length: 478aa    MW: 51922.6 Da    PI: 7.9439
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0235s0230.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.92e-24103147145
                     WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                             d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+
  SapurV1A.0235s0230.3.p 103 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVES 147
                             79****************************************986 PP

2QLQ57.25e-203368237
                     QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                            +FT++Q+++L++Q+l+yKy+ a++PvP++L+ +++k
  SapurV1A.0235s0230.3.p 33 SFTPSQWMELEHQALIYKYITARVPVPSNLIIPLKK 68
                            8******************************99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.2E-113268IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.8E-143366IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.1873368IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.54103147IPR014977WRC domain
PfamPF088795.7E-21104146IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MLQARNVFCY VAGYDTGALN AGMHGTFTGV RGSFTPSQWM ELEHQALIYK YITARVPVPS  60
NLIIPLKKSI YPYGLPGSST GSFPHNSLGW SAFHLVYPGN NTDPEPGRCR RTDGKKWRCS  120
RDAVADQKYC ERHINRGRHR SRKPVESQTG HAATGTASSN VLPMSNSTSK LVISSGGASN  180
GIAMTMQQQF KILQPAAANS SADADVNRAQ DARNISMMSS TINQKSDESS FSVPKQDFSM  240
EQCSQTEFGF VSSDSLLNPS QKSSYNNSKP NESFLNFNDK ESQDQHAPRH FINDWPKDQS  300
NRSVICWPEE LKSDWTQLSM SIPMASSDFS SSSSSPTHEK LALSPMRLSC EFDHVQMGLR  360
VSIDHNESSQ KQTNWIPISW GTSIGGPLGE VLTTNTSHAD SCKSSSALSL LREGCDGSPQ  420
LRSSPTGVLQ KSAFCSLSNS SSGSSPRAES KKNNDTASLY EDVLGSIIAS SSPIPSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818753e-44LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132623e-44LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007851.10.0PREDICTED: growth-regulating factor 1-like
SwissprotO810011e-111GRF1_ARATH; Growth-regulating factor 1
TrEMBLB9IBM40.0B9IBM4_POPTR; Uncharacterized protein
STRINGPOPTR_0014s00780.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.17e-98growth-regulating factor 1